PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC9086_p3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 258aa    MW: 28893.2 Da    PI: 7.8092
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC9086_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.52.5e-08154201455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR +iN+++  L++++P +     k +  a++L + ++Y++sLq
  RrC9086_p3 154 SHSLAERVRRGKINERLKCLQDIVPGC----YKAMGMATMLVEIINYVQSLQ 201
                 8*************************8....355999999999****99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.25E-9148205No hitNo description
SuperFamilySSF474598.9E-16148218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.869150200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-15150212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-6154201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-8156206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MANLSSDLQT YTVDDPITQL AELNNTLHQF QTMFAPPFSS SLESLLFHHH QHQPLPDHFP  60
GKSPENNFHQ GVFVPSNIHN KNDESSSRVD TKKRKTLMAS MSTSENSVSD QTSSAQVSIN  120
GNSSSRRGKR SKNIEEKERE VVHVRAKRGQ ATDSHSLAER VRRGKINERL KCLQDIVPGC  180
YKAMGMATML VEIINYVQSL QNQVEFLSMK LTAASSYYDF NSEADAVDSM QKAKAREAVE  240
MGQGRDGNTV FHSSSWTL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4885851e-148AF488585.1 Arabidopsis thaliana clone bHLH050 putative bHLH transcription factor mRNA, partial sequence.
GenBankAK1187811e-148AK118781.1 Arabidopsis thaliana At1g73830 mRNA for putative bHLH transcription factor (bHLH050), complete cds, clone: RAFL21-11-M10.
GenBankBT0060551e-148BT006055.1 Arabidopsis thaliana clone U51368 putative helix-loop-helix DNA-binding protein (At1g73830) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590557.10.0PREDICTED: transcription factor BEE 3
RefseqXP_013705420.10.0PREDICTED: transcription factor BEE 3-like
SwissprotQ8GWK71e-146BEE3_ARATH; Transcription factor BEE 3
TrEMBLA0A0D3D0G90.0A0A0D3D0G9_BRAOL; Uncharacterized protein
STRINGBra015960.1-P1e-180(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29972765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73830.11e-122BR enhanced expression 3